Merge pull request 'block refcount repair' (#782) from block-ref-repair into next-0.10

Reviewed-on: #782

doc/book/operations/durability-repairs.md

@@ -141,4 +141,7 @@ blocks may still be held by Garage. If you suspect that such corruption has occu
 in your cluster, you can run one of the following repair procedures:
 
 - `garage repair versions`: checks that all versions belong to a non-deleted object, and purges any orphan version
-- `garage repair block_refs`: checks that all block references belong to a non-deleted object version, and purges any orphan block reference (this will then allow the blocks to be garbage-collected)
+
+- `garage repair block-refs`: checks that all block references belong to a non-deleted object version, and purges any orphan block reference (this will then allow the blocks to be garbage-collected)
+
+- `garage repair block-rc`: checks that the reference counters for blocks are in sync with the actual number of non-deleted entries in the block reference table

src/block/lib.rs

@@ -11,3 +11,4 @@ mod metrics;
 mod rc;
 
 pub use block::zstd_encode;
+pub use rc::CalculateRefcount;

src/block/manager.rs

@@ -88,7 +88,7 @@ pub struct BlockManager {
 
 	mutation_lock: Vec<Mutex<BlockManagerLocked>>,
 
-	pub(crate) rc: BlockRc,
+	pub rc: BlockRc,
 	pub resync: BlockResyncManager,
 
 	pub(crate) system: Arc<System>,
@@ -156,7 +156,7 @@ impl BlockManager {
 
 		let metrics = BlockManagerMetrics::new(
 			config.compression_level,
-			rc.rc.clone(),
+			rc.rc_table.clone(),
 			resync.queue.clone(),
 			resync.errors.clone(),
 		);
@@ -229,6 +229,12 @@ impl BlockManager {
 		}
 	}
 
+	/// Initialization: set how block references are recalculated
+	/// for repair operations
+	pub fn set_recalc_rc(&self, recalc: Vec<CalculateRefcount>) {
+		self.rc.recalc_rc.store(Some(Arc::new(recalc)));
+	}
+
 	/// Ask nodes that might have a (possibly compressed) block for it
 	/// Return it as a stream with a header
 	async fn rpc_get_raw_block_streaming(
@@ -316,9 +322,9 @@ impl BlockManager {
 			};
 		}
 
-		let msg = format!("Get block {:?}: no node returned a valid block", hash);
+		let err = Error::MissingBlock(*hash);
-		debug!("{}", msg);
+		debug!("{}", err);
-		Err(Error::Message(msg))
+		Err(err)
 	}
 
 	// ---- Public interface ----
@@ -381,7 +387,7 @@ impl BlockManager {
 
 	/// Get number of items in the refcount table
 	pub fn rc_len(&self) -> Result<usize, Error> {
-		Ok(self.rc.rc.len()?)
+		Ok(self.rc.rc_table.len()?)
 	}
 
 	/// Send command to start/stop/manager scrub worker

src/block/rc.rs

@@ -1,5 +1,7 @@
 use std::convert::TryInto;
 
+use arc_swap::ArcSwapOption;
+
 use garage_db as db;
 
 use garage_util::data::*;
@@ -8,13 +10,20 @@ use garage_util::time::*;
 
 use crate::manager::BLOCK_GC_DELAY;
 
+pub type CalculateRefcount =
+	Box<dyn Fn(&db::Transaction, &Hash) -> db::TxResult<usize, Error> + Send + Sync>;
+
 pub struct BlockRc {
-	pub(crate) rc: db::Tree,
+	pub rc_table: db::Tree,
+	pub(crate) recalc_rc: ArcSwapOption<Vec<CalculateRefcount>>,
 }
 
 impl BlockRc {
 	pub(crate) fn new(rc: db::Tree) -> Self {
-		Self { rc }
+		Self {
+			rc_table: rc,
+			recalc_rc: ArcSwapOption::new(None),
+		}
 	}
 
 	/// Increment the reference counter associated to a hash.
@@ -24,9 +33,9 @@ impl BlockRc {
 		tx: &mut db::Transaction,
 		hash: &Hash,
 	) -> db::TxOpResult<bool> {
-		let old_rc = RcEntry::parse_opt(tx.get(&self.rc, hash)?);
+		let old_rc = RcEntry::parse_opt(tx.get(&self.rc_table, hash)?);
 		match old_rc.increment().serialize() {
-			Some(x) => tx.insert(&self.rc, hash, x)?,
+			Some(x) => tx.insert(&self.rc_table, hash, x)?,
 			None => unreachable!(),
 		};
 		Ok(old_rc.is_zero())
@@ -39,28 +48,28 @@ impl BlockRc {
 		tx: &mut db::Transaction,
 		hash: &Hash,
 	) -> db::TxOpResult<bool> {
-		let new_rc = RcEntry::parse_opt(tx.get(&self.rc, hash)?).decrement();
+		let new_rc = RcEntry::parse_opt(tx.get(&self.rc_table, hash)?).decrement();
 		match new_rc.serialize() {
-			Some(x) => tx.insert(&self.rc, hash, x)?,
+			Some(x) => tx.insert(&self.rc_table, hash, x)?,
-			None => tx.remove(&self.rc, hash)?,
+			None => tx.remove(&self.rc_table, hash)?,
 		};
 		Ok(matches!(new_rc, RcEntry::Deletable { .. }))
 	}
 
 	/// Read a block's reference count
 	pub(crate) fn get_block_rc(&self, hash: &Hash) -> Result<RcEntry, Error> {
-		Ok(RcEntry::parse_opt(self.rc.get(hash.as_ref())?))
+		Ok(RcEntry::parse_opt(self.rc_table.get(hash.as_ref())?))
 	}
 
 	/// Delete an entry in the RC table if it is deletable and the
 	/// deletion time has passed
 	pub(crate) fn clear_deleted_block_rc(&self, hash: &Hash) -> Result<(), Error> {
 		let now = now_msec();
-		self.rc.db().transaction(|tx| {
+		self.rc_table.db().transaction(|tx| {
-			let rcval = RcEntry::parse_opt(tx.get(&self.rc, hash)?);
+			let rcval = RcEntry::parse_opt(tx.get(&self.rc_table, hash)?);
 			match rcval {
 				RcEntry::Deletable { at_time } if now > at_time => {
-					tx.remove(&self.rc, hash)?;
+					tx.remove(&self.rc_table, hash)?;
 				}
 				_ => (),
 			};
@@ -68,6 +77,58 @@ impl BlockRc {
 		})?;
 		Ok(())
 	}
+
+	/// Recalculate the reference counter of a block
+	/// to fix potential inconsistencies
+	pub fn recalculate_rc(&self, hash: &Hash) -> Result<(usize, bool), Error> {
+		if let Some(recalc_fns) = self.recalc_rc.load().as_ref() {
+			trace!("Repair block RC for {:?}", hash);
+			let res = self
+				.rc_table
+				.db()
+				.transaction(|tx| {
+					let mut cnt = 0;
+					for f in recalc_fns.iter() {
+						cnt += f(&tx, hash)?;
+					}
+					let old_rc = RcEntry::parse_opt(tx.get(&self.rc_table, hash)?);
+					trace!(
+						"Block RC for {:?}: stored={}, calculated={}",
+						hash,
+						old_rc.as_u64(),
+						cnt
+					);
+					if cnt as u64 != old_rc.as_u64() {
+						warn!(
+							"Fixing inconsistent block RC for {:?}: was {}, should be {}",
+							hash,
+							old_rc.as_u64(),
+							cnt
+						);
+						let new_rc = if cnt > 0 {
+							RcEntry::Present { count: cnt as u64 }
+						} else {
+							RcEntry::Deletable {
+								at_time: now_msec() + BLOCK_GC_DELAY.as_millis() as u64,
+							}
+						};
+						tx.insert(&self.rc_table, hash, new_rc.serialize().unwrap())?;
+						Ok((cnt, true))
+					} else {
+						Ok((cnt, false))
+					}
+				})
+				.map_err(Error::from);
+			if let Err(e) = &res {
+				error!("Failed to fix RC for block {:?}: {}", hash, e);
+			}
+			res
+		} else {
+			Err(Error::Message(
+				"Block RC recalculation is not available at this point".into(),
+			))
+		}
+	}
 }
 
 /// Describes the state of the reference counter for a block

src/block/repair.rs

@@ -107,7 +107,7 @@ impl Worker for RepairWorker {
 				for entry in self
 					.manager
 					.rc
-					.rc
+					.rc_table
 					.range::<&[u8], _>((start_bound, Bound::Unbounded))?
 				{
 					let (hash, _) = entry?;

src/block/resync.rs

@@ -367,6 +367,13 @@ impl BlockResyncManager {
 		}
 
 		if exists && rc.is_deletable() {
+			if manager.rc.recalculate_rc(hash)?.0 > 0 {
+				return Err(Error::Message(format!(
+					"Refcount for block {:?} was inconsistent, retrying later",
+					hash
+				)));
+			}
+
 			info!("Resync block {:?}: offloading and deleting", hash);
 			let existing_path = existing_path.unwrap();
 
@@ -453,7 +460,15 @@ impl BlockResyncManager {
 				hash
 			);
 
-			let block_data = manager.rpc_get_raw_block(hash, None).await?;
+			let block_data = manager.rpc_get_raw_block(hash, None).await;
+			if matches!(block_data, Err(Error::MissingBlock(_))) {
+				warn!(
+					"Could not fetch needed block {:?}, no node returned valid data. Checking that refcount is correct.",
+					hash
+				);
+				manager.rc.recalculate_rc(hash)?;
+			}
+			let block_data = block_data?;
 
 			manager.metrics.resync_recv_counter.add(1);
 

src/garage/cli/structs.rs

@@ -473,8 +473,11 @@ pub enum RepairWhat {
 	#[structopt(name = "mpu", version = garage_version())]
 	MultipartUploads,
 	/// Repropagate version deletions to the block ref table
-	#[structopt(name = "block_refs", version = garage_version())]
+	#[structopt(name = "block-refs", version = garage_version())]
 	BlockRefs,
+	/// Recalculate block reference counters
+	#[structopt(name = "block-rc", version = garage_version())]
+	BlockRc,
 	/// Verify integrity of all blocks on disc
 	#[structopt(name = "scrub", version = garage_version())]
 	Scrub {

src/garage/cli/util.rs

@@ -451,7 +451,7 @@ pub fn print_block_info(
 	if refcount != nondeleted_count {
 		println!();
 		println!(
-			"Warning: refcount does not match number of non-deleted versions (see issue #644)."
+			"Warning: refcount does not match number of non-deleted versions, you should try `garage repair block-rc`."
 		);
 	}
 }

src/garage/repair/online.rs

@@ -4,6 +4,7 @@ use std::time::Duration;
 use async_trait::async_trait;
 use tokio::sync::watch;
 
+use garage_block::manager::BlockManager;
 use garage_block::repair::ScrubWorkerCommand;
 
 use garage_model::garage::Garage;
@@ -16,11 +17,14 @@ use garage_table::replication::*;
 use garage_table::*;
 
 use garage_util::background::*;
+use garage_util::data::*;
 use garage_util::error::Error;
 use garage_util::migrate::Migrate;
 
 use crate::*;
 
+const RC_REPAIR_ITER_COUNT: usize = 64;
+
 pub async fn launch_online_repair(
 	garage: &Arc<Garage>,
 	bg: &BackgroundRunner,
@@ -47,6 +51,13 @@ pub async fn launch_online_repair(
 			info!("Repairing the block refs table");
 			bg.spawn_worker(TableRepairWorker::new(garage.clone(), RepairBlockRefs));
 		}
+		RepairWhat::BlockRc => {
+			info!("Repairing the block reference counters");
+			bg.spawn_worker(BlockRcRepair::new(
+				garage.block_manager.clone(),
+				garage.block_ref_table.clone(),
+			));
+		}
 		RepairWhat::Blocks => {
 			info!("Repairing the stored blocks");
 			bg.spawn_worker(garage_block::repair::RepairWorker::new(
@@ -282,3 +293,98 @@ impl TableRepair for RepairMpu {
 		Ok(false)
 	}
 }
+
+// ===== block reference counter repair =====
+
+pub struct BlockRcRepair {
+	block_manager: Arc<BlockManager>,
+	block_ref_table: Arc<Table<BlockRefTable, TableShardedReplication>>,
+	cursor: Hash,
+	counter: u64,
+	repairs: u64,
+}
+
+impl BlockRcRepair {
+	fn new(
+		block_manager: Arc<BlockManager>,
+		block_ref_table: Arc<Table<BlockRefTable, TableShardedReplication>>,
+	) -> Self {
+		Self {
+			block_manager,
+			block_ref_table,
+			cursor: [0u8; 32].into(),
+			counter: 0,
+			repairs: 0,
+		}
+	}
+}
+
+#[async_trait]
+impl Worker for BlockRcRepair {
+	fn name(&self) -> String {
+		format!("Block refcount repair worker")
+	}
+
+	fn status(&self) -> WorkerStatus {
+		WorkerStatus {
+			progress: Some(format!("{} ({})", self.counter, self.repairs)),
+			..Default::default()
+		}
+	}
+
+	async fn work(&mut self, _must_exit: &mut watch::Receiver<bool>) -> Result<WorkerState, Error> {
+		for _i in 0..RC_REPAIR_ITER_COUNT {
+			let next1 = self
+				.block_manager
+				.rc
+				.rc_table
+				.range(self.cursor.as_slice()..)?
+				.next()
+				.transpose()?
+				.map(|(k, _)| Hash::try_from(k.as_slice()).unwrap());
+			let next2 = self
+				.block_ref_table
+				.data
+				.store
+				.range(self.cursor.as_slice()..)?
+				.next()
+				.transpose()?
+				.map(|(k, _)| Hash::try_from(&k[..32]).unwrap());
+			let next = match (next1, next2) {
+				(Some(k1), Some(k2)) => std::cmp::min(k1, k2),
+				(Some(k), None) | (None, Some(k)) => k,
+				(None, None) => {
+					info!(
+						"{}: finished, done {}, fixed {}",
+						self.name(),
+						self.counter,
+						self.repairs
+					);
+					return Ok(WorkerState::Done);
+				}
+			};
+
+			if self.block_manager.rc.recalculate_rc(&next)?.1 {
+				self.repairs += 1;
+			}
+			self.counter += 1;
+			if let Some(next_incr) = next.increment() {
+				self.cursor = next_incr;
+			} else {
+				info!(
+					"{}: finished, done {}, fixed {}",
+					self.name(),
+					self.counter,
+					self.repairs
+				);
+				return Ok(WorkerState::Done);
+			}
+		}
+
+		Ok(WorkerState::Busy)
+	}
+
+	async fn wait_for_work(&mut self) -> WorkerState {
+		unreachable!()
+	}
+}

src/model/garage.rs

@@ -247,6 +247,14 @@ impl Garage {
 		#[cfg(feature = "k2v")]
 		let k2v = GarageK2V::new(system.clone(), &db, meta_rep_param);
 
+		// ---- setup block refcount recalculation ----
+		// this function can be used to fix inconsistencies in the RC table
+		block_manager.set_recalc_rc(vec![
+			block_ref_recount_fn(&block_ref_table),
+			// other functions could be added here if we had other tables
+			// that hold references to data blocks
+		]);
+
 		// -- done --
 		Ok(Arc::new(Self {
 			config,

src/model/s3/block_ref_table.rs

@@ -3,8 +3,12 @@ use std::sync::Arc;
 use garage_db as db;
 
 use garage_util::data::*;
+use garage_util::error::*;
+use garage_util::migrate::Migrate;
 
+use garage_block::CalculateRefcount;
 use garage_table::crdt::Crdt;
+use garage_table::replication::TableShardedReplication;
 use garage_table::*;
 
 use garage_block::manager::*;
@@ -84,3 +88,38 @@ impl TableSchema for BlockRefTable {
 		filter.apply(entry.deleted.get())
 	}
 }
+
+pub fn block_ref_recount_fn(
+	block_ref_table: &Arc<Table<BlockRefTable, TableShardedReplication>>,
+) -> CalculateRefcount {
+	let table = Arc::downgrade(block_ref_table);
+	Box::new(move |tx: &db::Transaction, block: &Hash| {
+		let table = table
+			.upgrade()
+			.ok_or_message("cannot upgrade weak ptr to block_ref_table")
+			.map_err(db::TxError::Abort)?;
+		Ok(calculate_refcount(&table, tx, block)?)
+	})
+}
+
+fn calculate_refcount(
+	block_ref_table: &Table<BlockRefTable, TableShardedReplication>,
+	tx: &db::Transaction,
+	block: &Hash,
+) -> db::TxResult<usize, Error> {
+	let mut result = 0;
+	for entry in tx.range(&block_ref_table.data.store, block.as_slice()..)? {
+		let (key, value) = entry?;
+		if &key[..32] != block.as_slice() {
+			break;
+		}
+		let value = BlockRef::decode(&value)
+			.ok_or_message("could not decode block_ref")
+			.map_err(db::TxError::Abort)?;
+		assert_eq!(value.block, *block);
+		if !value.deleted.get() {
+			result += 1;
+		}
+	}
+	Ok(result)
+}

src/util/data.rs

@@ -83,6 +83,19 @@ impl FixedBytes32 {
 		ret.copy_from_slice(by);
 		Some(Self(ret))
 	}
+	/// Return the next hash
+	pub fn increment(&self) -> Option<Self> {
+		let mut ret = *self;
+		for byte in ret.0.iter_mut().rev() {
+			if *byte == u8::MAX {
+				*byte = 0;
+			} else {
+				*byte = *byte + 1;
+				return Some(ret);
+			}
+		}
+		return None;
+	}
 }
 
 impl From<garage_net::NodeID> for FixedBytes32 {
@@ -140,3 +153,25 @@ pub fn fasthash(data: &[u8]) -> FastHash {
 pub fn gen_uuid() -> Uuid {
 	rand::thread_rng().gen::<[u8; 32]>().into()
 }
+
+#[cfg(test)]
+mod test {
+	use super::*;
+
+	#[test]
+	fn test_increment() {
+		let zero: FixedBytes32 = [0u8; 32].into();
+		let mut one: FixedBytes32 = [0u8; 32].into();
+		one.0[31] = 1;
+		let max: FixedBytes32 = [0xFFu8; 32].into();
+		assert_eq!(zero.increment(), Some(one));
+		assert_eq!(max.increment(), None);
+
+		let mut test: FixedBytes32 = [0u8; 32].into();
+		let i = 0x198DF97209F8FFFFu64;
+		test.0[24..32].copy_from_slice(&u64::to_be_bytes(i));
+		let mut test2: FixedBytes32 = [0u8; 32].into();
+		test2.0[24..32].copy_from_slice(&u64::to_be_bytes(i + 1));
+		assert_eq!(test.increment(), Some(test2));
+	}
+}

src/util/error.rs

@@ -70,6 +70,9 @@ pub enum Error {
 	#[error(display = "Corrupt data: does not match hash {:?}", _0)]
 	CorruptData(Hash),
 
+	#[error(display = "Missing block {:?}: no node returned a valid block", _0)]
+	MissingBlock(Hash),
+
 	#[error(display = "{}", _0)]
 	Message(String),
 }